Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938757.1_cds_XP_016483544.1_74648
CDS Infomation

[gene=LOC107804209] [db_xref=GeneID:107804209] [protein=pectate lyase] [protein_id=XP_016483544.1] [location=join(6263..6839,6938..7238,7336..7651)] [gbkey=CDS]
Sequence

ATGGACGTCTACAGAATAAGAATTAGTGTATTTTTTCTCCTTGTGTTACTCACATTTGCT
GCATTAACGACAGCAACAAACATCCCAAGAAGGCAACTCAGTAACAAGAAATACAAAGGC
CCATGCCGGGCCGAAAATGCAATCGACAAATGCTGGCGATGCGACCCAAATTGGGCCGAG
AATCGCCAGAAAATGGCCGATTGCGCATTGGGCTTTGGCAGCAATGCGATCGGAGGAAAG
TTGGGCCGAATTTACGTCGTCACGGACAATTCTGACGACGATGTTGTCGATCCTAAGCCC
GGAACTCTCCGATATGGCGTTATCCAAAAGGAGCCATTGTGGATCATATTTGGCAAAAAC
ATGAAAATTAAGCTTAGTAGGGAACTTATCGTGACTAGCAACAAAACTATCGACGGCCGA
GGATTTAATGTCCATATACAAAATGGAGCTGGCATTAAGATACAATCTGCATCCAATATT
ATTATTTCTAACCTCCGTATTCACAATATTGTACCCACCCCAGGTGGCCTGCTCAGGGAA
TCTGAGGACCACGTTGGTCTAAGGGGTAGCGATGAAGGTGATGGCATCAGCATCTTCAGT
TCGCATGATATATGGATCGATCACATTTCCATGTCTCGTGCAACCGATGGTCTTATCGAT
GCTGTTGCTGCTTCCACTAACATTACCATATCCAATTGCCACTTCACTGACCACGAAAAA
GTAATGTTGTTCGGCGCCAACGATCATTACGTGCTTGACAAGGACATGAAAATTACATTA
GCGTACAACCACTTTGGAAAGAGGTTGGATCAAAGGATGCCAAGATGCAGGTTTGGATTT
TTCCATCTGGTGAACAATGACTACACTCATTGGGAGAGGTACGCTATTGGCGGAAGCAGT
GGAGCCACCATTATTAGCCAGGGTAATCGATTTATTGCTGAGGATGAATTGTTGGTGAAA
GAAGTAACATATAGAGAAAAACTTACGGCGAGTGTGGCGGAATGGATGAAATGGACTTGG
ATATCAGATGGTGATGATATGGAAAATGGTGCTACATTTACACCATCTGGTGACCAGAAT
TTACTCGATAAAATTGACCATCTCAATCTGATTAAACCAGAACCTTCTTCTAAAGTTGGA
ATTCTTACTAAGTTTTCTGGTGCTCTGTCTTGCGTCAAAGGACGTCCATGCTAA

Peptide Sequence

PEP ID

XP_016483544.1
PEP Infomation

PREDICTED: pectate lyase [Nicotiana tabacum]
Sequence

MDVYRIRISVFFLLVLLTFAALTTATNIPRRQLSNKKYKGPCRAENAIDKCWRCDPNWAE
NRQKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKN
MKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRE
SEDHVGLRGSDEGDGISIFSSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEK
VMLFGANDHYVLDKDMKITLAYNHFGKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSS
GATIISQGNRFIAEDELLVKEVTYREKLTASVAEWMKWTWISDGDDMENGATFTPSGDQN
LLDKIDHLNLIKPEPSSKVGILTKFSGALSCVKGRPC

Transcript Sequence

Gene sequence data has not been registered.